########################################
# Program: needle
# Rundate: Thu 11 Feb 2016 06:57:06
# Commandline: needle
#    -auto
#    -stdout
#    -asequence emboss_needle-I20160211-065705-0450-26526538-pg.asequence
#    -bsequence emboss_needle-I20160211-065705-0450-26526538-pg.bsequence
#    -datafile EDNAFULL
#    -gapopen 10.0
#    -gapextend 0.5
#    -endopen 10.0
#    -endextend 0.5
#    -aformat3 pair
#    -snucleotide1
#    -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: KJ530681.1
# 2: 2976
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 362
# Identity:     318/362 (87.8%)
# Similarity:   319/362 (88.1%)
# Gaps:          20/362 ( 5.5%)
# Score: 1499.0
# 
#
#=======================================

KJ530681.1         1 ------GGAGGCAAGGCCCCCAGGAAGCAGCTGGCCACCAAGGCTGCTCG     44
                           ||||||||||||||||||||||||||||||||||||||.|||||
2976               1 tcTACCGGagGCAAGGCCCCCAGGAaGCAGCTGGCCACCAAGGCAGCTCG     50

KJ530681.1        45 CAAGAGCGCCCCGGCCACAGGTGGAGTGAAGAAGCCCCATCGTTACAGGC     94
                     ||||||.|||||.||.||.|||||||||||||||||||||||||||||||
2976              51 CAAGAGTGCCCCAGCAACTGGTGGAGTGAAGAAGCCCCATCGTTACAGGC    100

KJ530681.1        95 CCGGCACAGTTGCCCTGCGTGAGATCCGTCGTTACCAGAAGAGCACCGAA    144
                     |.|||||||||||.||||||||||||||||||||||||||||||||.||.
2976             101 CTGGCACAGTTGCTCTGCGTGAGATCCGTCGTTACCAGAAGAGCACAGAG    150

KJ530681.1       145 CTGCTGATCCGCAAGCTTCCATTCCAGCGTCTGGTCCGTGAGATCGCACA    194
                     |||||||||||||||||.|||||||||||||||||.|||||||||||.||
2976             151 CTGCTGATCCGCAAGCTGCCATTCCAGCGTCTGGTGCGTGAGATCGCCCA    200

KJ530681.1       195 GGACTTCAAGACCGATCTGCGTTTCCAGAGCTCCGCCGTGATGGCTTTAC    244
                     ||||||||||||.||.|||||.|||||||||||.||.||.||||||||.|
2976             201 GGACTTCAAGACTGACCTGCGCTTCCAGAGCTCTGCTGTCATGGCTTTGC    250

KJ530681.1       245 AAGAGGCCAGTGAGGCTTACCTGGTTGGCCTGTTCGAGGACACCAACCTG    294
                     |.|||||.||.||||||||||||||||||||||||||||||||||||.||
2976             251 AGGAGGCTAGCGAGGCTTACCTGGTTGGCCTGTTCGAGGACACCAACTTG    300

KJ530681.1       295 TGCGCCATCCACGCCAAGCGTGTCACTATTATGCCTAAGGATATGTCA--    342
                     |||||||||||||||||||||||||||||||||||:||||||||||||  
2976             301 TGCGCCATCCACGCCAAGCGTGTCACtATtATGCCyAAGGATATGTCATA    350

KJ530681.1       343 ------------    342
                                 
2976             351 GCTGTTTCCdga    362


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